Best medical accounting software
Simplify patient billing and insurance claims
FreshBooks simplifies patient billing and insurance claims for healthcare organizations, reducing administrative burdens and ensuring accurate, timely payments. This helps medical practices focus more on patient care and less on paperwork.


Track medical supply expenses accurately
FreshBooks enables healthcare organizations to accurately track medical supply expenses, providing clear insights into spending and helping to manage budgets effectively. This ensures resources are used efficiently, and financial health is maintained.
Manage payroll for medical staff efficiently
FreshBooks helps manage payroll for medical staff efficiently, automating pay calculations, tax deductions, and compliance, which saves time and minimizes errors. This ensures staff are paid accurately and on time, boosting morale and reducing administrative overhead.
Generate detailed financial reports for compliance
FreshBooks generates detailed financial reports for healthcare organizations, aiding in compliance with regulations and providing a clear view of financial performance. These reports are essential for audits, strategic planning, and maintaining financial transparency.
Streamline revenue cycle management
FreshBooks streamline revenue cycle management for healthcare organizations, optimizing the process from patient registration to payment collection. This leads to improved cash flow, reduced billing errors, and increased financial stability.
FreshBooks Accounting Software Testimonial Videos
All the features you will need for your medical accounting software
Automate medical billing & save time
FreshBooks automates medical billing processes, including insurance claims, patient payments, and expense tracking, saving significant time and reducing errors. This automation allows medical professionals to concentrate on delivering quality patient care rather than getting bogged down by administrative tasks.


Faster patient payments with detailed invoicing
FreshBooks’ invoicing features are designed to meet the specific needs of a medical practice, offering detailed patient bills, efficient insurance claim management, and automated payment reminders. These tools enhance cash flow and minimize billing errors, ensuring financial stability and accuracy.
Gain real-time insights into practice financial health
FreshBooks provides medical practices with real-time financial insights through comprehensive revenue cycle reports, detailed expense analysis, and profitability tracking. These insights support informed decision-making and better practice management, leading to improved financial outcomes.

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Free vs. FreshBooks medical accounting software
Free accounting software might seem cost-effective for medical practices, but it often lacks essential features like detailed invoicing, efficient insurance claim management, and comprehensive financial reporting. These limitations can create challenges in managing finances and ensuring compliance.
FreshBooks offers a robust alternative designed specifically for healthcare organizations. It streamlines patient billing, automates insurance claims, and provides real-time insights into your practice’s financial health. For instance, FreshBooks simplifies the creation of detailed patient bills, automates payment reminders, and accurately tracks medical supply expenses.
By automating tasks and minimizing errors, FreshBooks helps medical professionals focus on patient care while maintaining financial stability and accuracy.
Accounting apps & integrations for healthcare organizations
FreshBooks integrates with 100+ apps, giving healthcare organizations the ability to customize their accounting experience and efficiently manage their finances.
Support that actually supports you 💙
- Help From Start to Finish: Our Support team is highly knowledgeable and never transfers you to another department.
- 4.8/5.0 Star Reviews: Yup, that’s our Support team approval rating across 120,000+ reviews
- Global Support: We’ve got over 100 Support staff working across North America and Europe

Accounting software by industry
Feeling overwhelmed by bookkeeping? FreshBooks offers industry-specific accounting software that simplifies finances and boosts efficiency, letting you focus on what truly matters. Visit our industry pages below to learn how FreshBooks can fulfill all your accounting needs!

Trades and Home Services
Creative Professionals

Specific Professions
Specialized Industries

Online and Digital Services
Resources to support healthcare organizations

Medical Mileage Rate 2025: Everything You Need to Know

Self-Employed Health Insurance Deduction

Do Small Businesses Have to Offer Health Insurance? A Guide to Employee Health Benefits
Frequently asked questions
The best healthcare accounting software, like FreshBooks, streamlines billing, manages patient payments efficiently and automates financial tasks. It is designed to handle the specific needs of medical practices, ensuring accuracy and compliance.
Healthcare practices need specialized accounting software to manage complex billing processes, insurance claims, patient payment plans, and compliance requirements. This software helps automate tasks, reduce errors, and improve financial management.
Yes, medical accounting software helps with tax compliance and reporting by generating detailed financial reports, tracking expenses, and ensuring accurate financial records. This simplifies the tax preparation process and reduces the risk of errors.
Yes, medical accounting software can handle patient payment plans by setting up payment schedules, tracking payments, and sending reminders. This helps healthcare practices manage patient finances effectively and ensures timely payments.